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About Bits in Bio
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BiB #3: Digital Tools Shaping the Future of Bioproduction
Published:
This month we are happy to welcome Dr. Gabriel Dumy from Kolibri and Dr. Gregory Batt from INRIA and Institut Pasteur. for two talks on the use of AI for clinical trial design and analysis:
BiB #2: AI for Clinical trial design and analysis
Published:
This month we are happy to welcome Dr. Benedicte Colnet from INRIA and Dr. Felix Balazard from Owkin for two talks on the use of AI for clinical trial design and analysis:
portfolio
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publications
Missdeepcausal: Causal inference from incomplete data using deep latent variable models
Published in arXiv, 2020
Work on infereing propensity scores using VAEs, my role was on building the infrastructure for running a large number of experiments.
Recommended citation: Mayer, Imke and Josse, Julie and Raimundo, Félix and Vert, Jean-Philippe (2020). " MissDeepCausal: Causal Inference from Incomplete Data Using Deep Latent Variable Models ." arXiv. https://arxiv.org/abs/2002.10837
Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Published in Genome Biology, 2020
Recommended citation: Felix Raimundo, Celine Vallot, Jean-Philippe Vert (2020). " Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis ." Genome Biology. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02128-7
Machine learning for single-cell genomics data analysis
Published in Current Opinion in Systems Biology, 2021
Recommended citation: Felix Raimundo, Celine Vallot, Jean-Philippe Vert (2021). " Machine learning for single-cell genomics data analysis ." Current Opinion in Systems Biology. https://www.sciencedirect.com/science/article/abs/pii/S2452310021000172
Methods, systems, and media for presenting content organized by category
Published in US Patent, 2021
Recommended citation: Alexander Pak, Felix Raimundo, Sertan Girgin, Raphael Marinier, Vincent Simonet (2021). " Methods, systems, and media for presenting content organized by category ." US Patent. https://patents.google.com/patent/US11036743B2/en
Best practices for single-cell histone modification analysis
Published in Genome Biology, 2022
Recommended citation: Felix Raimundo, Pacôme Prompsy, Jean-Philippe Vert, Celine Vallot (2022). " Best practices for single-cell histone modification analysis ." biorXiv. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02981-2
talks
Talk 1 on Relevant Topic in Your Field
Published:
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Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
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teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
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Teaching experience 2
Workshop, University 1, Department, 2015
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